This page describes how to install PyMOL on Mac OS X.
- Download PyMOL 0.99rc6. Display molecular models for scientific projects. PyMol is a complex tool designed for scientific professionals that need to know the molecular structure of different substances. The application is very complete, open source, and not suitable for beginners. The program allows.
- This page was last modified on 28 June 2012, at 05:52. This page has been accessed 51,915 times. Content is available under GNU Free Documentation License 1.2.
- 1Incentive PyMOL
- 2Open-Source PyMOL
UPDATE- New Version is now integrated in the official PyMOL plugin repository! -UPDATE- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands. Feb 18, 2020 This version, called “Incentive PyMOL”, includes an installer for Windows (the original open-source PyMOL is a Python-based project which can't be installed just as easy on Windows systems), incentive documentation, user support and handy tutorials, or even built-in.
Schrödinger provides pre-compiled PyMOL to paying sponsors. Helvetica neue free download. The bundle also includes ready-to-use APBS, RigiMOL, an MPEG encoder for movie export, and a small molecule energy minimization engine.
Installation: Drag PyMOL.app on the /Applications shortcut. (In principle, you could drag it into any Finder window and run it from there, it doesn’t have to live in /Applications).
Uninstallation: Move /Applications/PyMOL.app to Trash
Launching from Command Line
The unix executable resides at /Applications/PyMOL.app/Contents/MacOS/PyMOL
Applies to PyMOL 1.x, not to PyMOL 2.x
Google translate toolbar download free mac. Windows 8 & 8.1: A welcome dialog appears. Windows 7: A Chrome window opens once everything is done. Click Next to select your default browser.
MacPyMOL can optionally run with the same two-window GUI which PyMOL uses on Windows and Linux. This GUI has some additional features, like the Plugin menu and the Builder.
There are two ways to launch the X11 interface:
- Rename or copy/duplicate /Applications/MacPyMOL.app to /Applications/MacPyMOLX11Hybrid.app or to /Applications/PyMOLX11Hybrid.app
- Launch the unix executable with the -m flag: /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL -m
Stereo on Second Monitor
The trick to getting MacPyMOL to work in stereo on the second monitor is to force it to initially open on that display by providing an appropriate '-X #' (and perhaps -Y #) option on launch. That way the OpenGL context will be created with stereo support.
Source:Warren DeLano; PyMOL Users Archive
Open-Source PyMOL is available free of charge and may be readily installed via the Homebrew (recommended), MacPorts, or Fink package managers.
You may need to make sure that the dependencies are installed with the required flags, e.g. for MacPorts:
If PyMOL complains that it wasn't able to find X11, try starting xquartz first, then run pymol from the console.
Install from Source
If you want the latest PyMOL code (warning: might include experimental changes), then follow the Linux installation instructions. You will need an environment like Fink, MacPorts or Homebrew to install the dependencies. Make sure you use the appropriate python interpreter (e.g. /sw/bin/python2.7 when using Fink).
To run PyMOL with a native PyQt library (linked against macOS OpenGL framework, not against XQuartz), it needs to be built with the
Install APBS with Fink
To use the electrostatics plugin, you will need APBS and its dependencies. These are also available as Fink packages, and include APBS, maloc and pdb2pqr. If you have multiple processors available, you might wish to install the MPI version of APBS.
Pymol Free Download For Windows
Issuing the command
will install apbs and its required dependencies for you. The fink pymol package is already preconfigured to do the right thing to use apbs as a plugin.
Free Pymol Version For Windows
Some older Macs seem to crash with stereo graphics. If this happens to you, a workaround is to launch PyMOL explicitly in Mono mode with `pymol -M`. You can also set up an alias in your ~/.profile:
- Bill Scott’sMacOSX-specific .pymolrc file and his crystallographic software wiki and website, including instructions on how to install precompiled binary packages using fink.